ERX371668
Illumina HiSeq 2000 sequencing

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

ArrayExpress-CellType
Mammary Epithelial
ArrayExpress-Genotype
Wildtype
ArrayExpress-GrowthCondition
As described on ATCC
ArrayExpress-Immunoprecipitate
BRD4
ArrayExpress-OrganismPart
Mammary gland
ArrayExpress-Phenotype
Cancer
ArrayExpress-Sex
female
ArrayExpress-Species
Homo sapiens
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
2014-01-07T10:46:39Z
ENA-LAST-UPDATE
2018-03-08T16:44:20Z
External Id
SAMEA2190005
INSDC center name
SC
INSDC first public
2014-01-07T10:46:39Z
INSDC last update
2018-03-08T16:44:20Z
INSDC status
public
Submitter Id
WKSE_3b-sc-2013-09-23T13:09:56Z-1705806
common name
human
sample description
MCF10A cells BRD4 pulldown
sample name
WKSE_3b-sc-2013-09-23T13:09:56Z-1705806
scientific_name
Homo sapiens

Sequenced DNA Library

library_name
8215916
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChiP-seq

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6539379
Reads aligned (%)
99.8
Duplicates removed (%)
62.3
Number of peaks
57 (qval < 1E-05)

hg19

Number of total reads
6539379
Reads aligned (%)
99.2
Duplicates removed (%)
68.9
Number of peaks
1003 (qval < 1E-05)

Base call quality data from DBCLS SRA